Setup Instructions

0. NVIDIA Requirements

Before proceeding with the installation, ensure your system meets these NVIDIA requirements:

Recommended Configuration

• NVIDIA Driver: Version 550.120 or later

• CUDA Version: 12.4 or later

• CUDA Compiler (nvcc): 12.0 or later

Verify installation by running:

nvidia-smi  # Check driver and CUDA version
nvcc --version  # Check CUDA compiler version

If these commands fail, install or update:

1. NVIDIA drivers

2. CUDA Toolkit (includes nvcc)

For installation guide, visit NVIDIA CUDA Installation Guide.

1. Install Docker

Ensure Docker is installed on your system. If it’s not, you can download it from here.

2. Set Up PostgreSQL with pgvector

Run the following command to start a PostgreSQL container with the pgvector extension:

docker run -d --name pgvectorsql \
    -e POSTGRES_USER=usuario \
    -e POSTGRES_PASSWORD=clave \
    -e POSTGRES_DB=BioData \
    -p 5432:5432

Once the container is running, connect to the database and enable the vector extension:

docker exec -it pgvectorsql psql -U usuario -d BioData -c "CREATE EXTENSION IF NOT EXISTS vector;"

3. (Optional) Connect to the Database

You can use pgAdmin 4, a graphical interface for managing and interacting with PostgreSQL databases, or any other SQL client. Use the connection details defined during the docker run command (name, user, password, database, port) to access the database.

For more information or to download pgAdmin 4, visit the official website: pgAdmin 4.

After connecting to the database, you can:

• Verify the database status: Check that the database is running and accepting connections.

• Inspect tables and schema: Explore the database structure, including tables, columns, and relationships.

• Run queries: Perform SQL operations such as inserting, updating, or retrieving data.

• Monitor activity: Trace database activity by reviewing logs and active processes.

3. Set Up RabbitMQ

Start a RabbitMQ container using the command below:

docker run -d --name rabbitmq \
    -p 15672:15672 \
    -p 5672:5672 \
    rabbitmq:management

4. (Optional) Manage RabbitMQ

Once RabbitMQ is running, you can access its management interface to monitor and manage queues, exchanges, and messages.

Open your browser and go to: RabbitMQ Management Interface.

From this interface, you can:

• Inspect queues: View the list of queues, their message rates, and other details.

• Monitor message flow: Track the rate of incoming and outgoing messages in real-time.

Ensure that the RabbitMQ container is running and accessible at localhost:15672. Use the default credentials (guest/guest) unless you have configured different ones.